Installing Python Programming Language

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  1. Download Latest Version of Anaconda 3

Installing modules

  1. Go to Environments in Anaconda 3
  2. Create an environment for Python 3.9.7 called "PHRM 8010"
    1. This will take a few minutes
  3. Go to Home in Anaconda 3
  4. Select the new environment from "Applications on"
  5. Launch Spyder
  6. Lower Right Hand Window is "Ipython" window and type the following comands:
    1. !pip install simpy
      1. Used to do simulations
    2. !pip install lmfit
      1. Used for fitting data
    3. !pip install nmrglue
    4. !pip install sympy
      1. Symbolic mathematical python
    5. !pip install biopython
      1. Read biological files and analyze PDB files.
    6. !pip install pyspectra
    7. !pip install xlrd
      1. Analyze MS Excel Files
    8. !pip install openpyxl
      1. Analyze MS Excel Files
    9. !pip install python-docx
      1. Can change MS Word docx
    10. !pip install pandas
      1. Open any kind of file
    11. !pip install nimfa
      1. Non-negative matrix factorization
    12. !pip install beautifulsoup4
      1. Analyze xml files
    13. !pip install python-copasi
      1. Analyze copasi
    14. !pip install pyautogui
      1. Write macros
    15. !pip install easygui
      1. Easy to write gui interfaces
    16. !pip install equation
    17. !pip install python-pptx
      1. PowerPoint manipulation
    18. !pip install python-pptx-interface
      1. PowerPoint manipulation
    19. !pip install pyflowchart
    20. !pip install pycotools
      1. More advance way to manipulate Copasi
    21. !pip install pyatomac
      1. Writing specific macros on the Mac
    22. !pip install pywinauto
      1. easier of pyautogui
    23. !pip install pywinauto-recorder
      1. guess that it works with pywinauto
    24. !pip install pybel
      1. chemoinformatics module for python
    25. !pip install rdkit-pypi
      1. chemoinformatics module for python
    26. !pip install PySimpleGUI