Difference between revisions of "PHRM 8010"
Jump to navigation
Jump to search
| (10 intermediate revisions by the same user not shown) | |||
| Line 2: | Line 2: | ||
*[[Python Programming]] | *[[Python Programming]] | ||
= Assignments = | = Dr. Roberts' Assignments = | ||
* These are assignments that Dr. Roberts is responsible for. This does not apply to other lecturers in the course. | * These are assignments that Dr. Roberts is responsible for. This does not apply to other lecturers in the course. | ||
'''Assignment #1:''' [https://hygieia.rx.uga.edu/pharmwiki/index.php/Graphing_and_Data_Analysis Graphing and Data Analysis] | '''Assignment #1:''' [https://hygieia.rx.uga.edu/pharmwiki/index.php/Graphing_and_Data_Analysis Graphing and Data Analysis] | ||
* You can do the project that is explained or something more detailed. | |||
'''Assignment #2:''' [[NMR Spectrometer Simulator]] (10 out of 50 points) | '''Assignment #2:''' [[NMR Spectrometer Simulator]] (10 out of 50 points) | ||
* Dr. Zheng's part on organic chemistry= | * Dr. Zheng's part on organic chemistry = 25 points | ||
* Dr. Bartlett's part on M.S. spectrometry = 15 points | * Dr. Bartlett's part on M.S. spectrometry = 15 points | ||
* Dr. Robert's part with the NMR spectrometer simulator = 10 points | * Dr. Robert's part with the NMR spectrometer simulator = 10 points | ||
'''Assignment #3''': [https://hygieia.rx.uga.edu/pharmwiki/index.php/Bioinformatics_and_Chemoinformatics Bioinformatics and Chemoinformatics]*Requires installation of the Jupyter Lab IDE in Anaconda with Python version 3.7.1.1 | '''Assignment #3''': [https://hygieia.rx.uga.edu/pharmwiki/index.php/Bioinformatics_and_Chemoinformatics Bioinformatics and Chemoinformatics] | ||
* Requires installation of the Jupyter Lab IDE in Anaconda with Python version 3.7.1.1 | |||
*Recommend setting up a separate environment for doing this assignment | *Recommend setting up a separate environment for doing this assignment | ||
*If you have a small molecule drug for your Capstone project, pick three different methods to analyze your small molecule drug. | |||
*If you have a biologic drug for your Capstone project, pick three different methods to analyze your small drug. | |||
'''Assignment #4: Biologics-related presentation and discussion''' | |||
* Dr. Kennedy's assignment. | |||
'''Assignment #5: Essay on a newly developed biologic''' | |||
* Dr. Kennedy's assignment.: | |||
'''Assignment #6:''' [[Molecular and Homology Modeling project]] | |||
* You can do this project on your drug and your biological target. | |||
*Since we never talked about homology modelling, it has been cancelled as part of the assignment. | |||
= NMR Challenge = | |||
# [[Tutorials for the NMR challenge]]. | |||
# [https://hygieia.rx.uga.edu/labwiki/index.php/Pharm_8010_Processing_and_Analyzing_Protein_and_Small_Molecule_Data#Small_Molecule Small molecule NMR analysis of progesterone].<ref name=":0">You will need the password for the labwiki.org website to access this.</ref> | |||
# [https://hygieia.rx.uga.edu/labwiki/index.php/Pharm_8010_Processing_and_Analyzing_Protein_and_Small_Molecule_Data#Protein Small molecule NMR analysis of ubiquitin.]<ref name=":0" /> | |||
= Capstone Presentation- Drugs and Targets = | = Capstone Presentation- Drugs and Targets = | ||
* [https://hygieia.rx.uga.edu/pharmwiki/index.php/Table_of_Drugs_and_Targets Table of Drugs and Targets] | * [https://hygieia.rx.uga.edu/pharmwiki/index.php/Table_of_Drugs_and_Targets Table of Drugs and Targets] | ||
**You will have to pick a drug and a target. Each person will have a unique one. Please email it to me. | **You will have to pick a drug and a target. Each person will have a unique one. Please email it to me. | ||
* [[Possible Outline for the Capstone Presentation]] | |||
** When possible, you can use your drug (small molecule or biologic) and your biological target for the assignments. | |||
= Potentially Useful Information = | = Potentially Useful Information = | ||
| Line 25: | Line 52: | ||
* I have had a native speaker attest to the accuracy of [https://translate.yandex.com/ Yandex] to translate English into Arabic. | * I have had a native speaker attest to the accuracy of [https://translate.yandex.com/ Yandex] to translate English into Arabic. | ||
*For speaking text in various languages, [https://aws.amazon.com/polly/ AWS Polly] seems to be the best. | *For speaking text in various languages, [https://aws.amazon.com/polly/ AWS Polly] seems to be the best. | ||
*[[Chemical Class versus a Drug Class]] | |||
= Old = | = Old = | ||
* [[Old Version of PHRM 8010 website]] | * [[Old Version of PHRM 8010 website]] | ||
= References and Notes = | |||
<references /> | |||
Revision as of 15:58, 20 April 2022
Computer Programming
Dr. Roberts' Assignments
- These are assignments that Dr. Roberts is responsible for. This does not apply to other lecturers in the course.
Assignment #1: Graphing and Data Analysis
- You can do the project that is explained or something more detailed.
Assignment #2: NMR Spectrometer Simulator (10 out of 50 points)
- Dr. Zheng's part on organic chemistry = 25 points
- Dr. Bartlett's part on M.S. spectrometry = 15 points
- Dr. Robert's part with the NMR spectrometer simulator = 10 points
Assignment #3: Bioinformatics and Chemoinformatics
- Requires installation of the Jupyter Lab IDE in Anaconda with Python version 3.7.1.1
- Recommend setting up a separate environment for doing this assignment
- If you have a small molecule drug for your Capstone project, pick three different methods to analyze your small molecule drug.
- If you have a biologic drug for your Capstone project, pick three different methods to analyze your small drug.
Assignment #4: Biologics-related presentation and discussion
- Dr. Kennedy's assignment.
Assignment #5: Essay on a newly developed biologic
- Dr. Kennedy's assignment.:
Assignment #6: Molecular and Homology Modeling project
- You can do this project on your drug and your biological target.
- Since we never talked about homology modelling, it has been cancelled as part of the assignment.
NMR Challenge
- Tutorials for the NMR challenge.
- Small molecule NMR analysis of progesterone.[1]
- Small molecule NMR analysis of ubiquitin.[1]
Capstone Presentation- Drugs and Targets
- Table of Drugs and Targets
- You will have to pick a drug and a target. Each person will have a unique one. Please email it to me.
- Possible Outline for the Capstone Presentation
- When possible, you can use your drug (small molecule or biologic) and your biological target for the assignments.
Potentially Useful Information
- I have had native speakers in Chinese (several) and Italian attest to the accuracy of DeepL Translate to translate English into their native languages.
- I have had a native speaker attest to the accuracy of Yandex to translate English into Arabic.
- For speaking text in various languages, AWS Polly seems to be the best.
- Chemical Class versus a Drug Class