Difference between revisions of "Python Assignment"

From PharmWiki
Jump to navigation Jump to search
(Created page with "= RT-QPCR<ref>Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data</ref> =")
 
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
= Assignment #1 =
# Load External Data
# Analyze Data
#Graph Data
# Save Data
#Comments throughout
#MS Word
#*Page 1- Loaded Data
#*Page 2...Graph or Graph
#*From last page... Analysis
#Loaded Data, Saved Data and the Python File
* Flexibility with due date
= Modules =
* [https://pypi.org/project/qpcr qpcr- A python module to analyse qPCR data on single-datasets or high-throughput]
**[https://github.com/NoahHenrikKleinschmidt/qpcr/tree/main/Examples Examples]
**[https://github.com/NoahHenrikKleinschmidt/qpcr/tree/main/Examples/Example%20Data Example Data]
*[https://lmfit.github.io/lmfit-py/# lmfit- Non-linear Least Squares Minimization and Curve Fitting in Python]
**[https://lmfit.github.io/lmfit-py/examples/index.html Examples]
**[https://github.com/lmfit/lmfit-py/tree/master/examples Example Data]
*[https://pythonawesome.com/a-simplified-python-interface-to-copasi/ Basico- Enzyme simulations with Python]
**'''Prerequisite Modules:''' [https://pypi.org/project/python-copasi/ Python-Copasi], [https://pandas.pydata.org/ Pandas]
**[https://basico.readthedocs.io/en/latest/index.html Documentation]
*
= RT-QPCR<ref>Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data</ref> =
= RT-QPCR<ref>Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data</ref> =
== Installation ==
# In the Spyder console, type '''!pip install qpcr'''
#In the Spyder console, type '''!pip install seaborn'''
#<s>In the Spyder console, type '''!pip install csvkit'''</s>
== Programs ==
* Getting Started
* Manual Data Analysis
** Static
** Static #2
** Interactive #1
** Interactive #2
* Data analysis using a pipeline<br />
= References and Notes =

Latest revision as of 11:44, 17 February 2022

Assignment #1

  1. Load External Data
  2. Analyze Data
  3. Graph Data
  4. Save Data
  5. Comments throughout
  6. MS Word
    • Page 1- Loaded Data
    • Page 2...Graph or Graph
    • From last page... Analysis
  7. Loaded Data, Saved Data and the Python File
  • Flexibility with due date

Modules


RT-QPCR[1]

Installation

  1. In the Spyder console, type !pip install qpcr
  2. In the Spyder console, type !pip install seaborn
  3. In the Spyder console, type !pip install csvkit

Programs

  • Getting Started
  • Manual Data Analysis
    • Static
    • Static #2
    • Interactive #1
    • Interactive #2
  • Data analysis using a pipeline

References and Notes

  1. Auto-qPCR; a python-based web app for automated and reproducible analysis of qPCR data